STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
minD_2cobQ/CobB/MinD/ParA nucleotide binding domain protein. (207 aa)    
Predicted Functional Partners:
bcsE
cellulose_bcsE: cellulose biosynthesis protein BcsE.
  
 
 0.697
DM82_3235
parB_part: ParB/RepB/Spo0J family partition domain protein.
 
 
 0.691
parB
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
  
 
 0.646
noc
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
  
 
 0.636
DM82_3236
parB-like nuclease domain protein.
 
 
 0.613
DM82_1120
Putative gp58.
  
 
 0.606
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
  
 0.517
DM82_785
Methyltransferase domain protein.
  
   
 0.484
gidB
16S rRNA (guanine(527)-N(7))-methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.463
DM82_421
doxX family protein.
       0.446
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.