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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copA_1ATPase-IB1_Cu: copper-translocating P-type ATPase. (1059 aa)    
Predicted Functional Partners:
sodC
Copper/zinc superoxide dismutase family protein.
  
 0.988
DM82_3518
Heavy-metal-associated domain protein.
 
 
 0.875
cadA
ATPase-IB1_Cu: copper-translocating P-type ATPase.
 
 
0.858
actP_1
ATPase-IB1_Cu: copper-translocating P-type ATPase.
 
 
0.853
nirK
Cu_nitrite_red: nitrite reductase, copper-containing; Belongs to the multicopper oxidase family.
 
 0.747
frmR
Metal-sensitive transcriptional repressor family protein.
  
  
 0.720
groL-2
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
  
 0.699
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
  
 0.697
copA_2
Multicopper oxidase family protein.
 
 
 0.678
dps2
Ferritin-like domain protein; Belongs to the Dps family.
  
  
 0.668
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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