STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4236Squalene/phytoene synthase family protein. (349 aa)    
Predicted Functional Partners:
shc
Hopene_cyclase: squalene-hopene cyclase.
 
 
 0.973
ispA_2
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
 
 0.913
ispB
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
 0.900
ispA_1
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
 0.900
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.829
gap
GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.780
crtP
FAD dependent oxidoreductase family protein.
  
  
 0.645
DM82_4235
Hypothetical protein.
 
     0.617
norM_2
matE: MATE efflux family protein.
  
  
 0.562
DM82_2012
Radical SAM superfamily protein.
 
  
 0.543
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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