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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsrR_2Putative sugar-binding domain protein. (320 aa)    
Predicted Functional Partners:
rpiB
rpiB: ribose 5-phosphate isomerase B.
 
   
 0.823
dhaK
Dak1 domain protein.
     0.693
dhaL
dha_L_ycgS: dihydroxyacetone kinase, L subunit.
 
     0.660
gutB_3
Zinc-binding dehydrogenase family protein.
 
   
 0.637
DM82_5405
D-xylulose reductase.
 
   
 0.506
ptsP-2
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
 
  
 0.504
gutB_1
Zinc-binding dehydrogenase family protein.
 
   
 0.494
ytfQ_2
Periplasmic binding s and sugar binding domain of LacI family protein.
 
  
 0.477
ptsP-3
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase.
 
  
 0.466
araG_4
ABC transporter family protein.
  
  
 0.447
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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