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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsC_8Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (325 aa)    
Predicted Functional Partners:
araG_4
ABC transporter family protein.
 0.995
ytfQ_2
Periplasmic binding s and sugar binding domain of LacI family protein.
 0.993
rbsA_2
ABC transporter family protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.911
araG_2
ABC transporter family protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
 0.911
rbsA_4
ABC transporter family protein.
 0.911
ccmA
ccmA: heme ABC exporter, ATP-binding protein CcmA.
 0.909
araG_3
ABC transporter family protein.
 0.905
rbsA_3
ABC transporter family protein.
 0.904
rbsB_2
Periplasmic binding s and sugar binding domain of LacI family protein.
 0.902
ytfQ_1
ABC sugar (Ribose) transporter, periplasmic substrate-binding subunit.
 
 0.898
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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