Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
kduDShort chain dehydrogenase family protein. (256 aa)    
Predicted Functional Partners:
ytfQ_2
Periplasmic binding s and sugar binding domain of LacI family protein.
       0.762
bphB
Short chain dehydrogenase family protein.
  
     0.758
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
 
 0.697
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
 
 0.697
gutB_3
Zinc-binding dehydrogenase family protein.
 
    0.696
rbsC_8
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
       0.656
araG_4
ABC transporter family protein.
       0.652
dhaK
Dak1 domain protein.
 
 
   0.640
dhaL
dha_L_ycgS: dihydroxyacetone kinase, L subunit.
 
 
   0.640
gno
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.558
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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