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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gutB_3Zinc-binding dehydrogenase family protein. (378 aa)    
Predicted Functional Partners:
dhaK
Dak1 domain protein.
 
 
 0.849
dhaL
dha_L_ycgS: dihydroxyacetone kinase, L subunit.
 
 
 0.845
kduD
Short chain dehydrogenase family protein.
 
    0.695
lsrR_2
Putative sugar-binding domain protein.
 
   
 0.637
ytfQ_2
Periplasmic binding s and sugar binding domain of LacI family protein.
 
    0.623
xylB
xylB: xylulokinase.
  
 
 0.558
xylB-2
xylB: xylulokinase.
  
 
 0.558
adhT
Zinc-binding dehydrogenase family protein.
 
   
 0.557
xylB_1
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family.
 
  
 0.507
araG_4
ABC transporter family protein.
  
    0.494
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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