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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhaKDak1 domain protein. (334 aa)    
Predicted Functional Partners:
dhaL
dha_L_ycgS: dihydroxyacetone kinase, L subunit.
 0.999
kduD
Short chain dehydrogenase family protein.
 
 
 0.962
glpD
FAD dependent oxidoreductase family protein; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.860
gutB_3
Zinc-binding dehydrogenase family protein.
 
 
 0.849
gpsA
NAD-dependent glycerol-3-phosphate dehydrogenase family protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.817
glpC_1
Cysteine-rich domain protein.
     
  0.800
lsrR_2
Putative sugar-binding domain protein.
     0.693
rpiB
rpiB: ribose 5-phosphate isomerase B.
 
  
 0.678
acoR_1
Bacterial regulatory, Fis family protein.
 
 
 
 0.667
gla
MIP: MIP channel s family protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
  
 0.632
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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