Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dhaLdha_L_ycgS: dihydroxyacetone kinase, L subunit. (219 aa)    
Predicted Functional Partners:
dhaK
Dak1 domain protein.
 0.999
gutB_3
Zinc-binding dehydrogenase family protein.
 
 
 0.851
glpD
FAD dependent oxidoreductase family protein; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.850
gpsA
NAD-dependent glycerol-3-phosphate dehydrogenase family protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.807
glpC_1
Cysteine-rich domain protein.
     
  0.800
lsrR_2
Putative sugar-binding domain protein.
 
     0.660
rpiB
rpiB: ribose 5-phosphate isomerase B.
 
   
 0.657
ptsP-3
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase.
 
  
 0.646
kduD
Short chain dehydrogenase family protein.
 
 
   0.640
ptsP-2
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
 
  
 0.624
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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