STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_428Hypothetical protein. (1364 aa)    
Predicted Functional Partners:
DM82_427
Surface antigen variable number repeat family protein.
 
 0.999
DM82_2329
Polysaccharide biosynthesis family protein.
  
     0.746
epsM
Type II secretion system (T2SS), M family protein.
  
     0.742
DM82_795
Hypothetical protein.
  
     0.740
DM82_2065
Hypothetical protein.
 
     0.722
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.718
DM82_2055
Hypothetical protein; Anti sigma-E RseA, N-terminal domain protein.
  
     0.695
DM82_1749
Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.690
DM82_2411
EAL domain protein.
  
     0.687
DM82_1856
FKBP-type peptidyl-prolyl cis-trans isomerases 2; Putative cOG.
  
    0.683
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.