Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM82_4288Gram-negative porin family protein. (367 aa)    
Predicted Functional Partners:
DM82_1514
Putative membrane protein.
  
     0.761
DM82_6051
Putative membrane protein.
  
     0.758
DM82_3300
Thioredoxin family protein.
  
 
   0.754
DM82_3308
Hypothetical protein.
  
     0.745
DM82_2138
Hypothetical protein.
  
     0.736
DM82_2263
Transglycosylase SLT domain protein.
  
     0.734
DM82_1014
nlpB/DapX lipofamily protein.
  
   
 0.732
DM82_617
Putative lipoprotein transmembrane.
  
     0.717
priB
Putative primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
    0.713
DM82_1861
nlpB/DapX lipofamily protein.
  
   
 0.709
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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