STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_429Hypothetical protein. (254 aa)    
Predicted Functional Partners:
DM82_4748
NHL repeat family protein.
 
    0.676
DM82_6103
O-antigen ligase like membrane family protein.
  
     0.650
DM82_2282
Origin of replication binding family protein.
  
     0.619
DM82_5935
Hypothetical protein.
 
    0.606
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
 
  
 0.597
DM82_2283
Hypothetical protein.
  
     0.586
DM82_2636
Hypothetical protein.
    
 
 0.568
kfoC
Glycosyl transferase 2 family protein.
  
     0.533
ppsE_2
AMP-binding enzyme family protein.
 
 
 0.525
glgA
Glycosyl transferases group 1 family protein.
  
   0.502
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.