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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4309Putative fkbH domain protein. (493 aa)    
Predicted Functional Partners:
pksM
Thioester-redct: thioester reductase domain protein.
 
   
0.835
lysA_3
Hypothetical protein; Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein.
       0.781
ilvC_2
Acetohydroxy acid isomeroreductase, catalytic domain protein; Belongs to the ketol-acid reductoisomerase family.
       0.781
fadD_11
AMP-binding enzyme family protein.
       0.691
DM82_4314
Taurine catabolism dioxygenase TauD, TfdA family protein.
       0.643
prr
Gamma-aminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.642
tpa_2
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.642
DM82_4304
AMP-binding enzyme family protein.
     
 0.620
fabD-2
fabD: malonyl CoA-acyl carrier protein transacylase.
     
 0.561
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
 
   
 0.525
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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