STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutC_2Hypothetical protein. (241 aa)    
Predicted Functional Partners:
lutB_2
Iron-sulfur cluster-binding protein.
 
 
 0.992
lutA_3
Cysteine-rich domain protein.
 
 
 0.974
lutB_1
4Fe-4S binding domain protein.
 
 
 0.967
lutA_1
Cysteine-rich domain protein.
 
 
 0.889
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.713
DM82_62
Hypothetical protein; FAD linked oxidase, C-terminal domain protein.
  
 
 0.614
glpC_1
Cysteine-rich domain protein.
 
 
 0.611
lutA_2
4Fe-4S binding domain protein.
 
 
 0.601
glpC_2
4Fe-4S binding domain protein.
 
 
 0.596
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
  
 0.514
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.