STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcAGlycolate permease glcA; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family. (572 aa)    
Predicted Functional Partners:
mdlB_2
Dihydroorotate dehydrogenase family protein.
 
  
 0.608
mdlB
(S)-mandelate dehydrogenase.
 
  
 0.608
lldD
Hypothetical protein; Conserved region in glutamate synthase family protein.
 
  
 0.606
mdlB_3
FMN-dependent dehydrogenase family protein.
 
  
 0.604
DM82_62
Hypothetical protein; FAD linked oxidase, C-terminal domain protein.
  
  
 0.547
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.516
fruA
PTS system fructose-specific EIIBC component.
  
   
 0.496
DM82_4332
Hypothetical protein; DNA-directed RNA polymerase N-terminal family protein.
       0.450
lutB_1
4Fe-4S binding domain protein.
 
   
 0.429
lutB_2
Iron-sulfur cluster-binding protein.
 
   
 0.419
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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