STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adiAHypothetical protein; orn/Lys/Arg decarboxylase, N-terminal domain protein. (759 aa)    
Predicted Functional Partners:
speB
Agmatinase: agmatinase; Belongs to the arginase family.
    
 0.928
astA
arg_catab_AstA: arginine N-succinyltransferase.
   
 
  0.909
aruF
arg_AOST_alph: arginine/ornithine succinyltransferase, alpha subunit.
   
 
  0.909
gatm
Glycine amidinotransferase, mitochondrial.
     
 0.909
arcA
arcA: arginine deiminase.
    
 0.850
argH_1
D-ala D-ala ligase family protein.
     
 0.817
argH
argH: argininosuccinate lyase.
     
 0.817
argH_3
ATP-grasp domain protein.
     
 0.817
argH-2
argH: argininosuccinate lyase.
     
 0.817
DM82_436
Hypothetical protein.
       0.806
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.