Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
locus19DNA maturase B. (601 aa)    
Predicted Functional Partners:
DM82_4346
Zinc-binding domain of primase-helicase family protein.
  
     0.757
DM82_4373
Hypothetical protein.
       0.598
DM82_4348
DNA polymerase A family protein.
  
     0.586
DM82_4371
Hypothetical protein.
       0.575
DM82_4372
Phage holin 2 family protein.
       0.575
DM82_486
Hypothetical protein.
  
     0.560
DM82_4369
Hypothetical protein.
     
 0.466
DM82_4370
Hypothetical protein.
       0.435
DM82_4335
DNA-dependent RNA polymerase family protein.
  
     0.428
msbA_1
ABC transporter family protein.
  
     0.406
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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