STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiCmalate/L-lactate dehydrogenase family protein; Belongs to the LDH2/MDH2 oxidoreductase family. (343 aa)    
Predicted Functional Partners:
DM82_5110
Ornithine cyclodeaminase/mu-crystallin family protein.
     
 0.920
DM82_4652
Membrane dipeptidase family protein.
  
    0.901
aldH_3
Aldehyde dehydrogenase family protein.
 
   
 0.853
DM82_3544
Sodium Bile acid symporter family protein.
  
    0.851
yveA_2
Amino acid permease family protein.
  
    0.611
DM82_4401
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
   
 0.584
dapA_4
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
 
   
 0.564
fumB
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.498
DM82_4403
2Fe-2S iron-sulfur cluster binding domain protein.
 
     0.432
proP_12
Sugar (and other) transporter family protein.
     
 0.405
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.