STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiCmalate/L-lactate dehydrogenase family protein; Belongs to the LDH2/MDH2 oxidoreductase family. (343 aa)    
Predicted Functional Partners:
DM82_5110
Ornithine cyclodeaminase/mu-crystallin family protein.
     
 0.913
DM82_4652
Membrane dipeptidase family protein.
  
    0.867
DM82_3544
Sodium Bile acid symporter family protein.
  
    0.852
aldH_3
Aldehyde dehydrogenase family protein.
 
   
 0.850
DM82_4401
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
   
 0.599
yveA_2
Amino acid permease family protein.
  
    0.587
dapA_4
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
 
   
 0.547
fumB
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.466
aepY
ppyr-DeCO2ase: phosphonopyruvate decarboxylase.
  
  
 0.434
DM82_4403
2Fe-2S iron-sulfur cluster binding domain protein.
 
     0.432
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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