Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dapA_4Dihydrodipicolinate synthetase family protein; Belongs to the DapA family. (306 aa)    
Predicted Functional Partners:
aldH_3
Aldehyde dehydrogenase family protein.
 
 
 0.976
thiO_3
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
  
 0.974
DM82_4403
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
 0.966
thcD_3
FAD binding domain protein.
 
  
 0.963
aldH_1
Aldehyde dehydrogenase family protein.
 
 
 0.952
aldH_2
Aldehyde dehydrogenase family protein.
 
 
 0.951
DM82_4401
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
  
 0.893
pheA
CM_P2: chorismate mutase.
  
  
 0.626
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.621
ybiC
malate/L-lactate dehydrogenase family protein; Belongs to the LDH2/MDH2 oxidoreductase family.
 
   
 0.564
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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