STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_44014-hydroxyproline epimerase; Belongs to the proline racemase family. (310 aa)    
Predicted Functional Partners:
thiO_3
Pyridine nucleotide-disulfide oxidoreductase family protein.
 
  
 0.996
thcD_3
FAD binding domain protein.
 
  
  0.995
DM82_4403
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
  0.992
dapA_4
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
 
  
 0.893
soxS_2
Helix-turn-helix domain protein.
 
     0.858
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.844
proC_1
NADP oxidoreductase coenzyme F420-dependent family protein.
    
 0.831
aldH_3
Aldehyde dehydrogenase family protein.
 
 
 
 0.819
aldH_1
Aldehyde dehydrogenase family protein.
 
 
 
 0.746
aldH_2
Aldehyde dehydrogenase family protein.
 
 
 
 0.746
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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