STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thiO_3Pyridine nucleotide-disulfide oxidoreductase family protein. (377 aa)    
Predicted Functional Partners:
DM82_4401
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
  
 0.994
thcD_3
FAD binding domain protein.
 
  
 0.994
DM82_4403
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
 0.992
dapA_4
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
 
  
 0.970
gcvT_2
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
  
 0.902
soxS_2
Helix-turn-helix domain protein.
 
     0.721
soxD
Subunit delta of sarcosine oxidase.
  
 
 0.523
DM82_4654
NADH:flavin oxidoreductase / NADH oxidase family protein.
  
 0.513
fccB_2
FAD dependent oxidoreductase family protein.
   
 0.477
fccB_3
FAD dependent oxidoreductase family protein.
   
 0.477
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.