STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thiO_3Pyridine nucleotide-disulfide oxidoreductase family protein. (377 aa)    
Predicted Functional Partners:
DM82_4401
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
  
 0.996
thcD_3
FAD binding domain protein.
 
  
  0.996
DM82_4403
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
  0.994
dapA_4
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
 
  
 0.974
gcvT_2
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
  
 
 0.830
soxS_2
Helix-turn-helix domain protein.
 
     0.724
soxD
Subunit delta of sarcosine oxidase.
  
 
 0.465
aldH_3
Aldehyde dehydrogenase family protein.
 
    0.439
DM82_4997
Collagenase family protein.
  
     0.421
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.412
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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