Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_4425HD domain protein. (181 aa)    
Predicted Functional Partners:
phnA
hydr_PhnA: phosphonoacetate hydrolase.
    0.935
DM82_2522
phytanoyl-CoA dioxygenase family protein.
   
 0.817
phnD
3A0109s03R: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding family protein.
 
    0.816
phnY
phnAcAld_DH: putative phosphonoacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.785
DM82_5369
Carnitine_bodg: gamma-butyrobetaine hydroxylase.
     0.780
phnF
C_P_lyase_phnF: phosphonate metabolism transcriptional regulator PhnF.
 
    0.701
phnV
phnV: 2-aminoethylphosphonate ABC transport system, membrane component PhnV.
       0.615
phnT
phnT: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT.
       0.613
phnU
phnU: 2-aminoethylphosphonate ABC transporter, permease protein.
       0.613
phnJ
Protein phnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
 
    0.610
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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