STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4447Integrase core domain protein. (89 aa)    
Predicted Functional Partners:
DM82_4440
Integrase core domain protein.
 
     0.876
DM82_4854
Putative transposase.
 
     0.864
DM82_5863
Hypothetical protein.
 
     0.717
DM82_4853
Hypothetical protein.
 
     0.716
DM82_827
Transposase family protein.
 
     0.716
DM82_4433
Transposase family protein.
 
     0.714
DM82_6017
Hypothetical protein.
 
     0.708
DM82_876
Transposase family protein.
 
     0.450
DM82_6010
Integrase core domain protein.
  
     0.438
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.