Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_4457Cupredoxin-like domain protein. (109 aa)    
Predicted Functional Partners:
tpd
Fe2+ transport family protein.
 
  
 0.994
efeU_2
Iron permease FTR1 family protein.
 
  
 0.986
efeU_1
Iron permease FTR1 family protein.
 
  
 0.963
yccM
4Fe-4S binding domain protein.
 
    0.945
futA1
Bacterial extracellular solute-binding family protein.
   
    0.881
efeN
Dyp-type peroxidase family protein; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
  
  
 0.855
yfeX
Dyp_perox_fam: Dyp-type peroxidase family protein.
  
  
 0.855
DM82_2138
Hypothetical protein.
  
    0.524
DM82_6122
Hypothetical protein.
  
     0.511
DM82_4460
Hypothetical protein.
       0.490
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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