STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yccM4Fe-4S binding domain protein. (466 aa)    
Predicted Functional Partners:
efeU_2
Iron permease FTR1 family protein.
 
    0.986
tpd
Fe2+ transport family protein.
 
  
 0.956
DM82_4457
Cupredoxin-like domain protein.
 
    0.945
efeU_1
Iron permease FTR1 family protein.
 
    0.827
DM82_6296
Cupredoxin-like domain protein.
 
  
 0.780
DM82_4460
Hypothetical protein.
       0.649
DM82_2138
Hypothetical protein.
  
     0.619
DM82_6122
Hypothetical protein.
  
     0.619
norB
Cytochrome C and Quinol oxidase polypeptide I family protein.
  
  
 0.591
fdx_2
4Fe-4S dicluster domain protein.
  
 
 0.580
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.