Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_4468BFD-like [2Fe-2S] binding domain protein. (79 aa)    
Predicted Functional Partners:
bfr
Bacterioferritin; Iron-storage protein.
 
 
 0.941
DM82_4467
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  
 0.734
tolQ_4
motA/TolQ/ExbB proton channel family protein.
  
  
 0.646
exbD_5
Biopolymer transport ExbD/TolR family protein.
  
  
 0.598
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
 
     0.566
DM82_4004
Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
  
 0.562
tolA
tolA_full: protein TolA.
 
  
 0.528
DM82_2168
Hypothetical protein.
  
     0.503
gltB_2
Glutamine amidotransferases class-II family protein.
     
 0.502
DM82_3074
Neisseria meningitidis TspB family protein.
  
  
 0.470
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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