STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfrBacterioferritin; Iron-storage protein. (158 aa)    
Predicted Functional Partners:
DM82_4468
BFD-like [2Fe-2S] binding domain protein.
 
 
 0.941
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.921
DM82_2984
Pyridoxamine 5'-phosphate oxidase family protein.
     
  0.900
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.666
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.634
fumB
Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.540
dps2
Ferritin-like domain protein; Belongs to the Dps family.
   
  
 0.539
psiF
psiF repeat family protein.
  
    0.493
DM82_1059
PXPV repeat family protein.
   
  
 0.476
DM82_1794
PXPV repeat family protein.
   
  
 0.476
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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