STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4482Integrase core domain protein. (223 aa)    
Predicted Functional Partners:
DM82_4481
Transposase family protein.
 
   
 0.847
DM82_1456
HTH-like domain protein.
 
  
 0.801
DM82_840
Integrase core domain protein.
 
    0.781
DM82_381
Integrase core domain protein.
    0.719
DM82_1451
Integrase core domain protein.
    0.718
DM82_1455
Transposase family protein.
 
   
 0.703
DM82_378
Transposase family protein.
 
   
 0.701
DM82_4483
Transposase family protein.
 
  
 0.647
DM82_839
Sigma-70, region 4 family protein.
 
   
 0.505
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.