STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4497Chain length determinant family protein. (405 aa)    
Predicted Functional Partners:
DM82_4496
SLBB domain protein.
 
  
 0.971
DM82_2476
Capsule polysaccharide biosynthesis family protein.
  
  
 0.871
DM82_2343
ABC transporter family protein.
  
  
 0.854
kpsT
ABC transporter family protein.
  
  
 0.854
rfbG
CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase.
  
    0.802
rfbF
G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase.
       0.798
DM82_2344
ABC-2 type transporter family protein.
  
  
 0.795
kpsM
ABC-2 type transporter family protein.
  
  
 0.795
ddhC
CDP-4-keto-6-deoxy-D-glucose-3-dehydrase.
       0.781
DM82_4502
Polysaccharide biosynthesis family protein.
       0.774
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.