STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
wcaJ_2wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase. (460 aa)    
Predicted Functional Partners:
wzc
Eps_fam: capsular exopolysaccharide family domain protein.
 
  
 0.978
etk
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
  
 0.978
DM82_2447
Eps_transp_fam: exopolysaccharide transport family protein.
 
  
 0.976
algA_4
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.976
DM82_46
Polysaccharide biosynthesis/export family protein.
  
  
 0.940
gmd_2
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.923
DM82_4922
Glycosyl transferases group 1 family protein.
  
  
 0.923
gca_4
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.922
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.906
gmd-2
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.906
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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