Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ycaCIsochorismatase family protein. (228 aa)    
Predicted Functional Partners:
nfdA
Amidohydrolase family protein.
 
     0.804
DM82_4528
xapX: XapX domain protein.
 
    0.796
DM82_2258
Helix-turn-helix family protein.
   
    0.737
DM82_4536
Alginate export family protein.
 
     0.661
cpo
Non-heme chloroperoxidase.
 
   0.653
DM82_4518
Hypothetical protein.
 
     0.569
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 
 0.552
hchA
Hypothetical protein; N-terminal domain of DJ-1_PfpI family protein.
 
    0.530
dkgB
Aldo/keto reductase family protein.
   
    0.511
otsA
Alpha,alpha-trehalose-phosphate synthase; Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.
   
    0.508
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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