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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4536Alginate export family protein. (474 aa)    
Predicted Functional Partners:
hxuB
POTRA domain, ShlB-type family protein.
  
  
 0.904
btuB
tonB dependent receptor family protein.
     
 0.845
DM82_4535
Glyoxalase-like domain protein.
       0.807
oprB_2
Carbohydrate-selective porin, OprB family protein.
  
  
 0.804
skp
Outer membrane family protein; Belongs to the skp family.
    
 
 0.792
oprB_1
Carbohydrate-selective porin, OprB family protein.
  
  
 0.787
DM82_6126
tonB dependent receptor family protein.
     
 0.727
DM82_3701
3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein.
  
     0.724
DM82_5648
Phospholipase D family protein.
  
   
 0.696
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
    
 
 0.671
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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