Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4536Alginate export family protein. (474 aa)    
Predicted Functional Partners:
skp
Outer membrane family protein; Belongs to the skp family.
    
 
 0.826
DM82_4535
Glyoxalase-like domain protein.
       0.807
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
    
 
 0.750
DM82_3701
3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein.
  
     0.724
DM82_5648
Phospholipase D family protein.
  
     0.696
ycaC
Isochorismatase family protein.
 
     0.661
nfdA
Amidohydrolase family protein.
 
     0.652
epaO
spaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family.
  
  
 0.635
phoP_3
NB-ARC domain protein.
  
     0.605
DM82_4534
HD domain protein.
 
     0.604
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.