Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
puuD_2Peptidase C26 family protein. (251 aa)    
Predicted Functional Partners:
puuA_2
Glutamine synthetase, catalytic domain protein.
 
  
 0.904
puuB_5
FAD dependent oxidoreductase family protein.
 
  
 0.791
puuB_4
FAD binding domain protein.
 
  
 0.776
tpa_3
Aminotransferase class-III family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.769
puuA_1
Glutamine synthetase, catalytic domain protein.
 
  
 0.727
puuB_2
FAD binding domain protein.
 
  
 0.689
puuB_1
FAD binding domain protein.
 
  
 0.645
potF_4
Bacterial extracellular solute-binding family protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
   
 0.574
DM82_4652
Membrane dipeptidase family protein.
      0.539
puuR_4
Helix-turn-helix family protein.
 
  
 0.519
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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