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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4577Helix-turn-helix domain protein. (331 aa)    
Predicted Functional Partners:
DM82_4578
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.712
DM82_4579
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
     0.566
araC_3
Helix-turn-helix domain protein.
  
     0.563
cmpC
NMT1-like family protein.
 
     0.548
rhaR_5
Helix-turn-helix domain protein.
  
   0.502
rhaR_1
Helix-turn-helix domain protein.
  
   0.500
btr_2
Helix-turn-helix domain protein.
  
   0.496
cmpD_4
ABC transporter family protein.
       0.473
rhaS_2
Helix-turn-helix domain protein.
  
   0.467
DM82_6074
Helix-turn-helix domain protein.
  
     0.459
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.