STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_458Gram-negative porin family protein. (364 aa)    
Predicted Functional Partners:
DM82_4614
2OG-Fe(II) oxygenase superfamily protein.
  
     0.744
DM82_617
Putative lipoprotein transmembrane.
  
     0.726
DM82_176
O-Antigen ligase family protein.
  
    0.708
DM82_1749
Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.700
DM82_2168
Hypothetical protein.
  
     0.698
DM82_1514
Putative membrane protein.
  
     0.696
DM82_183
snoaL-like domain protein.
  
     0.695
DM82_2305
Hypothetical protein.
  
     0.695
DM82_3128
ATP synthase I chain family protein.
  
     0.694
DM82_3964
Initiator Replication family protein.
  
     0.690
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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