Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
cmpD_4ABC transporter family protein. (331 aa)    
Predicted Functional Partners:
cmpB_4
Binding--dependent transport system inner membrane component family protein.
 
 
 0.964
cmpC
NMT1-like family protein.
 
 
 0.922
DM82_5695
Binding--dependent transport system inner membrane component family protein.
 
 
 0.874
DM82_4579
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
 
    0.848
ssuC_1
Binding--dependent transport system inner membrane component family protein.
 
 
 0.847
DM82_4578
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.841
ssuC_2
Binding--dependent transport system inner membrane component family protein.
 
 
 0.839
cmpB_3
Binding--dependent transport system inner membrane component family protein.
 
 
 0.826
ssuC_3
Binding--dependent transport system inner membrane component family protein.
 
 
 0.821
nrtA
NMT1-like family protein.
 
 0.763
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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