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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4589Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein. (1282 aa)    
Predicted Functional Partners:
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
0.999
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
0.999
ppsE_2
AMP-binding enzyme family protein.
 0.999
dltA-2
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
 
0.998
DM82_6361
AMP-binding enzyme family protein.
 
0.997
DM82_4304
AMP-binding enzyme family protein.
 
0.996
thcB
Cytochrome domain protein; P450 116; Belongs to the cytochrome P450 family.
  
 0.994
dhbF_3
Thioesterase domain protein.
 
 0.993
fdx_2
4Fe-4S dicluster domain protein.
  
 0.992
nuoI
NADH-quinone oxidoreductase, chain I family protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 0.992
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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