STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4596Chitin binding domain protein. (366 aa)    
Predicted Functional Partners:
DM82_2766
Acyltransferase family protein.
 
     0.629
gbpA
Chitin binding domain protein.
 
   
 0.615
chiA
Putative bifunctional chitinase/lysozyme.
  
   
 0.567
DM82_3314
Toprim domain protein.
  
     0.536
DM82_4850
Hypothetical protein.
  
     0.487
chb
Chitobiase.
  
   
 0.473
DM82_4075
Hypothetical protein.
  
     0.465
cho
Cholesterol oxidase.
  
     0.436
DM82_3326
Helix-turn-helix family protein.
  
     0.433
DM82_56
Putative D-serine deaminase (D-serine dehydratase) protein.
 
     0.410
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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