STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeeAFusaric acid resistance family protein. (357 aa)    
Predicted Functional Partners:
DM82_13
PAS fold family protein.
  
     0.589
DM82_5142
Membrane bound FAD containing D-sorbitol dehydrogenase family protein.
  
     0.566
DM82_2816
Phage integrase family protein.
  
     0.565
DM82_5558
Dihydroneopterin aldolase family protein.
  
     0.565
DM82_5951
Putative transmembrane protein.
  
     0.550
DM82_4657
Electron transfer flavodomain protein.
  
     0.547
oprD
Outer membrane porin, OprD family protein.
  
     0.528
DM82_329
Major Facilitator Superfamily protein.
  
     0.522
DM82_332
Hypothetical protein.
  
     0.518
iscU
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.508
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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