Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4625vgr_GE: Rhs element Vgr family protein. (763 aa)    
Predicted Functional Partners:
DM82_4622
Hypothetical protein.
 
  
 0.955
DM82_4623
Hypothetical protein.
 
  
 0.953
hcp1_2
Hypothetical protein.
 
  
 0.895
DM82_4619
Hypothetical protein.
 
  
 0.885
DM82_4618
Hypothetical protein.
 
  
 0.883
DM82_4632
Hypothetical protein.
 
  
 0.881
DM82_4634
Intracellular multiplication and macrophage-killing family protein.
 
  
 0.878
clpV-2
VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family.
 
  
 0.867
DM82_2785
Hypothetical protein.
 
  
 0.831
DM82_4980
Hypothetical protein.
 
  
 0.831
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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