STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4633IV_VI_DotU: type IV/VI secretion system, DotU family domain protein. (601 aa)    
Predicted Functional Partners:
DM82_4634
Intracellular multiplication and macrophage-killing family protein.
 
 
 0.972
DM82_4984
impE family protein.
 
  
 0.964
DM82_4619
Hypothetical protein.
 
  
 0.963
DM82_4632
Hypothetical protein.
 
  
 0.962
DM82_4980
Hypothetical protein.
 
  
 0.959
DM82_3759
Hypothetical protein.
 
  
 0.947
DM82_4618
Hypothetical protein.
 
  
 0.918
DM82_4622
Hypothetical protein.
 
  
 0.915
DM82_2785
Hypothetical protein.
 
  
 0.912
DM82_3756
Hypothetical protein.
 
  
 0.912
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.