Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rafRHelix-turn-helix family protein. (338 aa)    
Predicted Functional Partners:
ptsP-2
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
   
 
 0.864
ptsP-3
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase.
   
 
 0.864
gltB_2
Glutamine amidotransferases class-II family protein.
    
 
 0.849
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
    
 
 0.759
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
    
 
 0.759
lacC
1-PFK: hexose kinase, 1-phosphofructokinase family protein; Belongs to the carbohydrate kinase PfkB family.
   
 
 0.690
lsdA
Levansucrase; Belongs to the glycosyl hydrolase 68 family.
 
  
 0.589
bglB
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
 
   
 0.566
DM82_3540
pfkB carbohydrate kinase family protein.
 
  
 0.536
dltA-2
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
    
 
 0.486
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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