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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4652Membrane dipeptidase family protein. (323 aa)    
Predicted Functional Partners:
DM82_4653
V4R domain protein.
 
  
 0.947
DM82_4657
Electron transfer flavodomain protein.
 
    0.886
ybiC
malate/L-lactate dehydrogenase family protein; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.867
DM82_4655
4Fe-4S dicluster domain protein.
 
    0.852
DM82_4654
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
    0.838
doxB
Ring hydroxylating alpha subunit family protein.
 
    0.811
hmp_3
2Fe-2S iron-sulfur cluster binding domain protein.
 
    0.683
glyA2
Serine hydroxymethyltransferase 2; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
  
 0.660
DM82_5559
Sarcosine oxidase, gamma subunit.
 
    0.653
soxD
Subunit delta of sarcosine oxidase.
 
    0.634
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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