STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
doxBRing hydroxylating alpha subunit family protein. (413 aa)    
Predicted Functional Partners:
hmp_3
2Fe-2S iron-sulfur cluster binding domain protein.
 
 0.998
DM82_4657
Electron transfer flavodomain protein.
 
 
  0.995
DM82_4655
4Fe-4S dicluster domain protein.
 
 
 0.994
DM82_4654
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
 
 0.991
etfA_3
Electron transfer flavodomain protein.
 
 
  0.978
DM82_4653
V4R domain protein.
 
    0.974
soxD
Subunit delta of sarcosine oxidase.
 
    0.929
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
   
 
  0.900
DM82_5559
Sarcosine oxidase, gamma subunit.
 
  
 0.880
gcvT_2
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
  
 0.864
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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