Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hmp_32Fe-2S iron-sulfur cluster binding domain protein. (386 aa)    
Predicted Functional Partners:
doxB
Ring hydroxylating alpha subunit family protein.
 
 0.998
DM82_4657
Electron transfer flavodomain protein.
 
 
 0.997
DM82_4655
4Fe-4S dicluster domain protein.
 
 
 0.996
DM82_4654
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
 
 0.990
etfA_3
Electron transfer flavodomain protein.
 
 
 0.977
DM82_4653
V4R domain protein.
 
    0.951
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
  
 
 0.905
gcvT_2
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
  
 0.875
soxD
Subunit delta of sarcosine oxidase.
 
  
 0.814
ycbX
MOSC domain protein.
      0.813
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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