Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4665Gram-negative porin family protein. (380 aa)    
Predicted Functional Partners:
DM82_3964
Initiator Replication family protein.
  
     0.763
DM82_1657
Tetratricopeptide repeat family protein.
  
     0.745
DM82_1014
nlpB/DapX lipofamily protein.
  
   
 0.736
lptE
Lipopolysaccharide-assembly family protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
   
 0.727
DM82_1514
Putative membrane protein.
  
     0.720
DM82_617
Putative lipoprotein transmembrane.
  
     0.718
DM82_1377
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.714
DM82_3793
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.713
DM82_3308
Hypothetical protein.
  
     0.706
DM82_1861
nlpB/DapX lipofamily protein.
  
   
 0.705
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.