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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4666Peptidase M20/M25/M40 family protein. (408 aa)    
Predicted Functional Partners:
DM82_4667
Peptidase propeptide and YPEB domain protein.
 
  
 0.786
DM82_4029
Thioredoxin family protein.
  
     0.673
DM82_4997
Collagenase family protein.
  
     0.614
hflB-2
ftsH_fam: ATP-dependent metallopeptidase HflB family protein; Belongs to the AAA ATPase family.
     
 0.534
metH_2
Homocysteine S-methyltransferase family protein.
     
 0.467
lasA
Peptidase M23 family protein.
  
  
 0.464
DM82_4510
Pectinacetylesterase family protein.
  
    0.456
lipA-3
Lipoyl synthase.
  
    0.446
lip
Lipase.
  
    0.432
npr
Thermolysin metallopeptidase, catalytic domain protein; Extracellular zinc metalloprotease.
 
  
 0.415
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.