Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4667Peptidase propeptide and YPEB domain protein. (567 aa)    
Predicted Functional Partners:
DM82_4666
Peptidase M20/M25/M40 family protein.
 
  
 0.791
DM82_6201
BNR repeat-like domain protein.
  
     0.768
DM82_883
Hypothetical protein.
  
     0.767
DM82_2571
parB-like nuclease family protein.
  
     0.756
DM82_4510
Pectinacetylesterase family protein.
  
     0.755
DM82_4224
Hypothetical protein.
  
     0.740
DM82_13
PAS fold family protein.
  
     0.734
DM82_4865
Histidine phosphatase super family protein.
  
     0.729
DM82_1624
Sigma-70, region 4 family protein.
  
   
 0.717
DM82_5444
ompW family protein.
  
    0.712
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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