Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_4670Hypothetical protein. (309 aa)    
Predicted Functional Partners:
paaH_2
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.916
DM82_4672
Hypothetical protein.
 
  
 0.901
paaH_1
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 
  
 0.777
choX
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
  
  
 0.604
kynB
Arylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
  
  
 0.538
rhaS_5
Helix-turn-helix domain protein.
 
     0.535
DM82_5568
Hypothetical protein.
  
    0.522
lip2_1
Alpha/beta hydrolase fold family protein.
  
  
 0.474
DM82_5369
Carnitine_bodg: gamma-butyrobetaine hydroxylase.
 
     0.406
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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