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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thiO_2FAD dependent oxidoreductase family protein. (414 aa)    
Predicted Functional Partners:
hpd_2
Xylose isomerase-like TIM barrel family protein.
   
 
 0.910
hppD
4HPPD: 4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.905
gcvT_2
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
  
 0.902
tyrB
Aromatic-amino-acid aminotransferase.
     
 0.900
tyrB_3
Aminotransferase class I and II family protein.
     
 0.900
tyrB_1
Aminotransferase class I and II family protein.
     
 0.900
hisC
hisC: histidinol-phosphate transaminase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.650
hisC-2
hisC: histidinol-phosphate transaminase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.650
pat
Aminotransferase class I and II family protein.
     
  0.650
hisC_1
Aminotransferase class I and II family protein; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.650
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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